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How data assimilation helps to illuminate complex biology

RIKEN AICS (Hrsg). 7th Japanese Data Assimilation Workshop : 27th February - 2nd March 2017. Kobe, Japan. 2017

Erscheinungsjahr: 2017

Titel des mehrbändigen Werkes: Invited talk given at the 3rd RIKEN International Symposium on Data Assimilation / The 7th Japanese Data Assimilation Workshop

Publikationstyp: Diverses (Konferenzbeitrag)

Sprache: Englisch

Website
GeprüftBibliothek

Inhaltszusammenfassung


https://www.youtube.com/watch?v=gm2RUsa7grg Mathematical models are often indispensable to understand, predict and control complex biological systems behaviour. Paradoxically, this complexity and the incompleteness of our knowledge is also the main obstacle for model development. Systematic model error and parameter uncertainty in combination with sparse and high dimensional data are characteristic challenges to modelling and data assimilation in the field of systems and quantitative biolo...https://www.youtube.com/watch?v=gm2RUsa7grg Mathematical models are often indispensable to understand, predict and control complex biological systems behaviour. Paradoxically, this complexity and the incompleteness of our knowledge is also the main obstacle for model development. Systematic model error and parameter uncertainty in combination with sparse and high dimensional data are characteristic challenges to modelling and data assimilation in the field of systems and quantitative biology. In this presentation we compare these problems to data assimilation challenges in the geosciences, where many sophisticated and highly efficient techniques have been developed. We will also present a recent data assimilation method, the Dynamic Elastic Net (DEN) for the simultaneous estimation of model errors and systems states. We show for some example biochemical reaction systems that the DEN can often provide accurate state estimates even in the presence of systematic model errors. However, sometimes model errors can not uniquely be identified from output measurements. We present a computational strategy to explore and rank possible alternative explanations for discrepancies between experimental data and model predictions, which can be used to guide systematic experiments to resolve ambiguities. We will discuss some ideas to extend the DEN to very large network systems. » weiterlesen» einklappen

  • Data Assimilation, Mathematical Models, Machine Learning, Statistics

Autoren


Kschischo, Maik (Autor)

Klassifikation


DFG Fachgebiet:
Mathematik

DDC Sachgruppe:
Mathematik