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Fragment generation and support vector machines for inducing SARs

SAR and QSAR in environmental research. Bd. 13. H. 5. New York, NY: Taylor & Francis 2002 S. 509 - 523

Erscheinungsjahr: 2002

Publikationstyp: Zeitschriftenaufsatz (Forschungsbericht)

Sprache: Englisch

Doi/URN: 10.1080/10629360290023340

Volltext über DOI/URN

Geprüft:Bibliothek

Inhaltszusammenfassung


structural fragments and support vector machines. it is tailored for bio-chemical databases, where the examples are 2-d descriptions of chemical compounds. the fragment generator finds all fragments (i.e., linearly connected atoms) that satisfy userspecified constraints regarding their frequency and generality. in this paper, we are querying for fragments within a minimum and a maximum frequency in the dataset. after fragment generation, we propose to apply support vector machines to the prob...structural fragments and support vector machines. it is tailored for bio-chemical databases, where the examples are 2-d descriptions of chemical compounds. the fragment generator finds all fragments (i.e., linearly connected atoms) that satisfy userspecified constraints regarding their frequency and generality. in this paper, we are querying for fragments within a minimum and a maximum frequency in the dataset. after fragment generation, we propose to apply support vector machines to the problem of inducing sars from these fragments. we conjuncture that support vector machines are particularly useful in this context, as they can deal with a large number of features. experiments in the domains of carcinogenicity and mutagenicity prediction show that minimum and maximum frequency queries for fragments can be answered within a reasonable time, and that the predictive accuracy obtained using these fragments is satisfactory. however, further experiments will have to confirm that this is a viable approach to inducing sars.},» weiterlesen» einklappen

Autoren


Kramer, Stefan (Autor)
Frank, Eibe (Autor)
Helma, Christoph (Autor)

Klassifikation


DFG Fachgebiet:
4.43 - Informatik

DDC Sachgruppe:
Informatik